TRANSFAC® FACTOR table fields
AC Accession no.
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ID Identifier
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DT Date; author
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FA Factor name
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SY Synonyms
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OS Species
OC Biological classification (taxonomy)
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GE Encoding gene
XX
HO Homologs (suggested)
XX
CL Classification (class accession no.; class identifier;
decimal classification number.)
XX
SZ Size (length (number of amino acids); calculated
molecular mass in kDa; experimental molecular mass
(or range) in kDa (experimental method) [Ref]
XX
SQ Sequence
XX
SC Sequence comment, i. e. source of the protein sequence
XX
FT Feature table (1st position last position feature)
XX
SF Structural features
XX
CP Cell specificity (positive)
CN Cell specificity (negative)
EX Expression pattern:
organ, cell name, system, developmental stage; relative level of expression
(very high, high, medium, low, very low, detectable or none);
detection method; molecule type detected, i.e. RNA or protein; [reference]
XX
FF Functional features
XX
IN Interacting factors (factor accession no.; factor name; biological species.)
XX
MX Matrix (MATRIX accession no.; identifier)
XX
BS Binding SITE accession no.
XX
DR External databases (EMBL, RSNP, SwissProt, PIR, Flybase, PDB,
DR TRANSCompelTM, PathoDB®, SMARt DBTM, TRANSPATH®, DATF, BKL)
DR EMBL: accession no.; identifier.
DR RSNP: accession no.; EMBL: accession no.; pos: SNP position in EMBL sequence;
var: variation introduced by SNP; effect of SNP (example–> RSNP: 97894;
EMBL: M61108; pos: 716; var: a,g; amino acid exchange, A47–>T);
XX
RN Reference no.
RX MEDLINE ID
RA Reference authors
RT Reference title
RL Reference data
XX
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