TRANSFAC® FACTOR table fields

AC        Accession no.
XX
ID        Identifier
XX
DT        Date; author
XX
FA        Factor name
XX
SY        Synonyms
XX
OS        Species
OC        Biological classification (taxonomy)
XX
GE        Encoding gene
XX
HO        Homologs (suggested)
XX
CL        Classification (class accession no.; class identifier;
          decimal classification number.)
XX
SZ        Size (length (number of amino acids); calculated 
molecular mass in kDa; experimental molecular mass (or range) in kDa (experimental method) [Ref] XX SQ Sequence XX SC Sequence comment, i. e. source of the protein sequence XX FT Feature table (1st position last position feature) XX SF Structural features XX CP Cell specificity (positive) CN Cell specificity (negative) EX Expression pattern: organ, cell name, system, developmental stage; relative level of expression (very high, high, medium, low, very low, detectable or none); detection method; molecule type detected, i.e. RNA or protein; [reference] XX FF Functional features XX IN Interacting factors (factor accession no.; factor name; biological species.) XX MX Matrix (MATRIX accession no.; identifier) XX BS Binding SITE accession no. XX DR External databases (EMBL, RSNP, SwissProt, PIR, Flybase, PDB, DR TRANSCompelTM, PathoDB®, SMARt DBTM, TRANSPATH®, DATF, BKL) DR EMBL: accession no.; identifier. DR RSNP: accession no.; EMBL: accession no.; pos: SNP position in EMBL sequence; var: variation introduced by SNP; effect of SNP (example–> RSNP: 97894; EMBL: M61108; pos: 716; var: a,g; amino acid exchange, A47–>T); XX RN Reference no. RX MEDLINE ID RA Reference authors RT Reference title RL Reference data XX //

 

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