AC T04195
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ID T04195
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DT 17.01.2001 (created); rio.
DT 02.11.2012 (updated); mkl.
CO Copyright (C), QIAGEN.
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FA Lhx9-isoform2
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SY Lhx9 alpha; LIM homeobox protein 9 alpha.
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OS mouse, Mus musculus
OC eukaryota; animalia; metazoa; chordata; vertebrata; tetrapoda; mammalia; eutheria; rodentia; myomorpha; muridae; murinae
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GE G002216 Lhx9.
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CL C0025; LIM-homeo; 3.1.5.3.2.3.
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SZ 321 AA; 36.1 kDa (cDNA) (calc.).
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SQ MLNGTTLEAAMLFHGISGGHIQGIMEEMERRSKTEARLTKGTQLNGRDAGMPPLSPEKPA
SQ LCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFS
SQ VQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFET
SQ LLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNEN
SQ EADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKR
SQ VLQGEQILGHYSQTSRRLKIP
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SC translated from EMBL #AJ243851
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FT 60 121 
PS50023; LIM_DOMAIN_2.
FT 61 114 
SM00132; lim_4.
FT 62 120 
PF00412; LIM domain.
FT 122 184 
PS50023; LIM_DOMAIN_2.
FT 123 177 
SM00132; lim_4.
FT 124 183 
PF00412; LIM domain.
FT 256 303 
PS50071; HOMEOBOX_2.
FT 258 310 
SM00389; HOX_1.
FT 259 303 
PF00046; Homeobox domain.
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SF Lhx9-isoform2 is truncated isoform of Lhx9 T04192 which lacks the third helix of the homeo domain [1];
SF expression pattern similar to Lhx9 T04192 but with lower level, later onset of expression and differences in the cortical pattern [1];
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CN (embryo >12.5 days:) neocortex [1].
EX archicortex,,,Theiler Stage 22; detectable; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
EX caudal ganglionic eminence (CGE),,,Theiler Stage 22; low; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
EX eminentia thalami,,,Theiler Stage 22; low; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
EX epithalamus,,,Theiler Stage 22; detectable; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
EX heart,,,Theiler Stage 22; detectable; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
EX isocortex,,,Theiler Stage 22; none; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
EX supraoptic area,,,Theiler Stage 22; low; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
EX thalamus,,,Theiler Stage 22; detectable; RNA-in situ hybridization (non-radioactive); RNA (undefined); [1].
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FF this truncated isoform may represent a supplementary degree of regulation within the LIM-homeo family [1];
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MX M01367 V$LHX9_01.
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DR TRANSPATH: MO000028088.
DR EMBL: AJ243851;
DR UniProtKB: Q9WUH2-2;
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RN [1]; RE0015592.
RX PUBMED: 10756098.
RA Failli V., Rogard M., Mattei M. G., Vernier P., Retaux S.
RT Lhx9 and Lhx9alpha LIM-homeodomain factors: genomic structure, expression patterns, chromosomal localization, and phylogenetic analysis
RL Genomics 64:307-317 (2000).
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